Computational and Systems Biology

Program affiliation
Plant and Microbial Biosciences
Molecular Microbiology and Microbial Pathogenesis
Computational and Systems Biology
Biochemistry Biophysics and Structural Biology

Research summary
Synthetic biology for advanced biofuels, biomaterials, and chemicals.

Key words
Synthetic biology, Metabolic engineering, regulatory systems, biomaterials

Program affiliation
Biomedical Informatics and Data Science
Cancer Biology
Computational and Systems Biology

Research summary
Deep learning; AI; Multi-omics; Translational cancer research; Cancer; Genomics; Imaging

Key words
RNA-seq, WGS, genomics, sequencing, deep learning, machine learning, artificial intelligence, AI, bioinformatics, computational biology, algorithm, multi-omics, cancer, HPV, radiation, PET, MRI, image

Program affiliation
Biomedical Informatics and Data Science
Computational and Systems Biology

Research summary
My research integrates causal modeling and machine learning to improve the reliability of real-world evidence generation and to improve the trustworthiness of AI-based clinical algorithms.

Key words
causal inference, machine learning, artificial intelligence, electronic health records, clinical informatics

Program affiliation
Plant and Microbial Biosciences
Computational and Systems Biology
Molecular Genetics and Genomics

Research summary
Epigenetic regulation of plant traits and environmental adaptation

Key words
Epigenetics, DNA methylation, Histone modification, gene silencing