Lindsey Hall

Program: Computational and Systems Biology

Current advisor: Gautam Dantas, PhD

Undergraduate university: University of Rochester, 2020

Enrollment year: 2022

Research summary

Graduate publications
Hall LR, Benedict EE, Edathadathil F, Jacob JJ, Suresh D, Krishna Y, Varghese JA, van Rheenen J, George IA, Kwon JH, Olsen MA, Vasudevan AK, Petersen EE, Westercamp M, Leekha S, Dantas G, Veeraraghavan B, Vayoth SO, Singh SK, Warren DK, Gandra S. 2026 Carbapenemase-producing carbapenem-resistant Enterobacterales in surgical intensive care unit patients in a tertiary hospital in India. Nat Commun, 17(1):7863. PMCID: PMC13443886

Campbell DE, Wu X, Hall LR, Lawrence D, Molleston JM, Schriefer LA, Droit L, Weagley JS, Olson BS, Rimmer J, Parkes M, Handley SA, Baldridge MT. 2025 Single cell viral tagging of Faecalibacterium prausnitzii reveals rare bacteriophages omitted by other techniques. Gut Microbes, 17(1):2526719. PMCID:

Mahmud B, Vargas RC, Sukhum KV, Patel S, Liao J, Hall LR, Kesaraju A, Le T, Kitchner T, Kronholm E, Koshalek K, Bendixsen CG, VanWormer JJ, Shukla SK, Dantas G. 2024 Longitudinal dynamics of farmer and livestock nasal and faecal microbiomes and resistomes. Nat Microbiol, 9(4):1007-20. PMCID: PMC11966613