Computational and Systems Biology
Vasavi Sundaram
Program: Computational and Systems Biology
Graduation Year: 2016
Thesis Advisor: Ting Wang
Thesis Title: Identifying The Regulatory Role Of Transposable Elements In Mammalian Genomes
Lee Tessler
Program: Computational and Systems Biology
Graduation Year: 2011
Thesis Advisor: Robi D. Mitra
Thesis Title: Digital Protein Analysis: Technologies for Protein Diagnostics and Proteomics through Single-Molecule Detection
Francesco Vallania
Program: Computational and Systems Biology
Graduation Year: 2013
Thesis Advisor: Robi D. Mitra
Thesis Title: On the origin of phenotypic variation: novel technologies to dissect molecular determinants of phenotype
Nathan Wamsley
Program: Computational and Systems Biology
Graduation Year: 2025
Thesis Advisor: Michael B. Major
Thesis Title: “Methods for the Acquisition and Analysis of Quantitative, Bottom-Up Protein Mass Spectrometry Data”
Liang-Bo Wang
Program: Computational and Systems Biology
Graduation Year: 2021
Thesis Advisor: Li Ding
Thesis Title: Building a toolbox and insights toward proteogenomic characterization of glioblastoma
Michael Ward
Program: Computational and Systems Biology
Graduation Year: 2022
Thesis Advisor: Gregory R. Bowman
Thesis Title: Combining computer simulations and deep learning to understand and predict protein structural dynamics
Naomi Wilson
Program: Computational and Systems Biology
Graduation Year: 2023
Thesis Advisor: Andrew L. Kau
Thesis Title: The influence of the gut microbiota on asthma in school-aged children and adults
Dennis Wu
Program: Computational and Systems Biology
Graduation Year: 2021
Thesis Advisor: Harrison W. Gabel
Thesis Title: Computational Analysis of Non-CpG DNA Methylation in the Mammalian Nervous System
Huiming Xia
Program: Computational and Systems Biology
Graduation Year: 2023
Thesis Advisor: Malachi Griffith
Thesis Title: Improving neoantigen prioritization algorithms for personalized cancer vaccine design
Mingchao Xie
Program: Computational and Systems Biology
Graduation Year: 2016
Thesis Advisor: Li Ding
Thesis Title: Discovery and functional implication of genetic alterations associated with clonal hematopoietic expansion