Computational and Systems Biology

Program: Computational and Systems Biology

Graduation Year: 2012

Thesis Advisor: Gary D. Stormo

Thesis Title: Identification of Combinatorial cis-regulation by Comparative Genomics

Program: Computational and Systems Biology

Graduation Year: 2023

Thesis Advisor: Gary J. Patti

Thesis Title: Automated Processing of Metabolomics Data for Population-scale Studies

Program: Computational and Systems Biology

Graduation Year: 2025

Thesis Advisor: Li Ding

Thesis Title: Needle in the Z-Stack: Mapping the 3D Transition to Malignancy

Program: Computational and Systems Biology

Graduation Year: 2016

Thesis Advisor: Ting Wang

Thesis Title: Identifying The Regulatory Role Of Transposable Elements In Mammalian Genomes

Program: Computational and Systems Biology

Graduation Year: 2011

Thesis Advisor: Robi D. Mitra

Thesis Title: Digital Protein Analysis: Technologies for Protein Diagnostics and Proteomics through Single-Molecule Detection

Program: Computational and Systems Biology

Graduation Year: 2013

Thesis Advisor: Robi D. Mitra

Thesis Title: On the origin of phenotypic variation: novel technologies to dissect molecular determinants of phenotype

Program: Computational and Systems Biology

Graduation Year: 2025

Thesis Advisor: Michael B. Major

Thesis Title: “Methods for the Acquisition and Analysis of Quantitative, Bottom-Up Protein Mass Spectrometry Data”

Program: Computational and Systems Biology

Graduation Year: 2021

Thesis Advisor: Li Ding

Thesis Title: Building a toolbox and insights toward proteogenomic characterization of glioblastoma

Program: Computational and Systems Biology

Graduation Year: 2025

Thesis Advisor: Li Ding

Thesis Title: "Advancing Precision Treatment of Multiple Myeloma with Single-Cell and Spatial Immune Profiling"

Program: Computational and Systems Biology

Graduation Year: 2022

Thesis Advisor: Gregory R. Bowman

Thesis Title: Combining computer simulations and deep learning to understand and predict protein structural dynamics