Computational and Systems Biology

Program: Computational and Systems Biology

Graduation Year: 2021

Thesis Advisor: Donald Franklin Conrad

Thesis Title: The Origins & Functional Effects of Postzygotic Mutations Throughout the Human Lifespan

Program: Computational and Systems Biology

Graduation Year: 2017

Thesis Advisor: Gary D. Stormo

Thesis Title: A Generalized Biophysical Model of Transcription Factor Binding Specificity and Its Application on High-Throughput SELEX Data

Program: Computational and Systems Biology

Graduation Year: 2017

Thesis Advisor: Rohit V. Pappu

Thesis Title: Determining the Molecular Mechanisms of Huntington’s Disease through Multi-Scale Modeling

Program: Computational and Systems Biology

Graduation Year: 2017

Thesis Advisor: John R. Edwards

Thesis Title: Modeling complex patterns of differential DNA methylation that associate with gene expression changes

Program: Computational and Systems Biology

Graduation Year: 2014

Thesis Advisor: Patrick Y. Jay

Thesis Title: Understanding the mechanism of maternal age’s influence on congenital heart defects

Program: Computational and Systems Biology

Graduation Year: 2018

Thesis Advisor: Li Ding

Thesis Title: Protein Structure-Guided Approaches to Identify Functional Mutations in Cancer

Program: Computational and Systems Biology

Graduation Year: 2017

Thesis Advisor: Kristen Marie Naegle

Thesis Title: Robust algorithms for detecting hidden structure in biological data

Program: Computational and Systems Biology

Graduation Year: 2012

Thesis Advisor: Gary D. Stormo

Thesis Title: Identification of Combinatorial cis-regulation by Comparative Genomics

Program: Computational and Systems Biology

Graduation Year: 2023

Thesis Advisor: Gary J. Patti

Thesis Title: Automated Processing of Metabolomics Data for Population-scale Studies

Program: Computational and Systems Biology

Graduation Year: 2025

Thesis Advisor: Li Ding

Thesis Title: Needle in the Z-Stack: Mapping the 3D Transition to Malignancy